Arnav Solanki: Difference between revisions

From The Circuits and Biology Lab at UMN
Jump to navigationJump to search
 
(2 intermediate revisions by the same user not shown)
Line 3: Line 3:
== About Me ==
== About Me ==


I'm a Postdoc in [http://www.ece.umn.edu Electrical and Computer Engineering] at the [http://www.umn.edu University of Minnesota], advised by Prof. [[Marc Riedel]]. I was born in Jaipur, India. I like learning random facts about space and biology (though I struggle remembering the latter)!
I'm a Postdoc in [http://www.ece.umn.edu Electrical and Computer Engineering] at the [http://www.umn.edu University of Minnesota], advised by Prof. [[Marc Riedel]]. I completed my Ph.D. in the same group in 2023. I was born in Jaipur, India.

I like learning random facts about space and biology (though I struggle remembering the latter)!


== Research ==
== Research ==
Line 141: Line 143:
|- valign="top"
|- valign="top"
| width="100" | '''title''':
| width="100" | '''title''':
| width="500" | [[Media:Solanki Riedel Cornette Udell Vasmatzis Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant.pdf|Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant]]
| width="500" | [[Media:Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf|Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant]]
|- valign="top"
|- valign="top"
| '''authors''':
| '''authors''':
| [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis]
| [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis]
|- valign="top"
|- valign="top"
| '''under review''':
| '''appeared in''':
| [https://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=8857 IEEE/ACM Trans. on Computational Biology and Bioinformatics], 2023
| [https://ieeexplore.ieee.org/document/10457533 IEEE/ACM Trans. on Computational Biology and Bioinformatics], pp. 1–11, March, 2024
|}
|}
| align="center" width="70" |
| width="70" align="center" |
<span class="plainlinks">
<span class="plainlinks">
[https://mriedel.ece.umn.edu/wiki/images/1/17/Solanki_Riedel_Cornette_Udell_Vasmatzis_Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
[https://mriedel.ece.umn.edu/wiki/images/1/12/Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>
<br>
[[Media:Solanki_Riedel_Cornette_Udell_Vasmatzis_Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf | Paper]]
[[Media:Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf | Paper]]
|}
|}


Line 180: Line 182:
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf http://mriedel.ece.umn.edu/wiki/images/3/36/Ppt.jpg]</span>
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf http://mriedel.ece.umn.edu/wiki/images/3/36/Ppt.jpg]</span>
<br>[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf Slides]
<br>[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf Slides]
|}

== Thesis ==

{|
|
{| style="background:#F0E68C"
|- valign="top"
| width="100" | '''title''':
| width="500" | [https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf Carving a Niche in the Intersection of Computer Engineering and Molecular Biology]
|- valign="top"
| '''author''':
| [[Arnav Solanki]]
|- valign="top"
| '''degree''':
| Ph.D., [http://www.ece.umn.edu Electrical Engineering], [http://www.umn.edu University of Minnesota]
|-
| '''year''':
| 2023
|}
| width="70" align="center" |
<span class="plainlinks">
[https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>
[https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf Ph.D. Dissertation]
|}
|}


Latest revision as of 10:13, 10 April 2024

Arnav Solanki profile image.jpg

About Me

I'm a Postdoc in Electrical and Computer Engineering at the University of Minnesota, advised by Prof. Marc Riedel. I completed my Ph.D. in the same group in 2023. I was born in Jaipur, India.

I like learning random facts about space and biology (though I struggle remembering the latter)!

Research

My research focus is on Bioinformatics, Cancer Genomics, and DNA computing.

Papers

title: Computing Mathematical Functions with Chemical Reactions via Stochastic Logic
authors: Arnav Solanki, Tonglin Chen, and Marc Riedel
appeared in: PLOS One, Vol. 18, No. 5, 2023

Pdf.jpg
Paper

title: Neural Network Execution Using Nicked DNA and Microfluidics
authors: Arnav Solanki, Zak Griffin, Purab Ranjan Sutradhar, Amlan Ganguly, Marc Riedel
under review: PLOS One, 2023

Pdf.jpg
Paper

title: Parallel Pairwise Operations on Data Stored in DNA: Sorting, XOR, Shifting, and Searching
authors: Arnav Solanki, Tonglin Chen, and Marc Riedel
under review in: Natural Computing, 2023
presented at: International Workshop on Bio-Design Automation, Cambridge, England, 2019.
presented at: International Conference on DNA Computing and Molecular Programming, 2021

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Cascadable Stochastic Logic for DNA Storage
authors: Arnav Solanki, Tonglin Chen and Marc Riedel
presented at: IEEE Visual Communications and Image Processing Conference, 2021

Pdf.jpg
Paper

title: Stochastic Computation on DNA strands through Hydroxyl Nicking
authors: Arnav Solanki, Tonglin Chen and Marc Riedel
presented at: Foundations of Nanoscience: Self-Assembled Architectures and Devices, 2020

Pdf.jpg
Abstract

Pdf.jpg
Poster

title: Concentration-Based Polynomial Calculations on Nicked DNA
authors: Tonglin Chen and Marc Riedel
presented at: IEEE International Conference on Acoustics, Speech, and Signal Processing, 2020

Pdf.jpg
Paper

title: Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant
authors: Arnav Solanki, Marc Riedel, James Cornette, Julia Udell, and George Vasmatzis
appeared in: IEEE/ACM Trans. on Computational Biology and Bioinformatics, pp. 1–11, March, 2024

Pdf.jpg
Paper

title: Hydrophobicity Identifies False Positives and False Negatives in Peptide-MHC Binding
authors: Arnav Solanki, Marc Riedel, James Cornette, Julia Udell, and George Vasmatzis
appeared in: Frontiers in Oncology, Vol. 12, No. 1034810, 2022
presented at: 3rd International Symposium on Mathematical and Computational Oncology, 2021

Pdf.jpg
Paper

Ppt.jpg
Slides

Thesis

title: Carving a Niche in the Intersection of Computer Engineering and Molecular Biology
author: Arnav Solanki
degree: Ph.D., Electrical Engineering, University of Minnesota
year: 2023

Pdf.jpg
Ph.D. Dissertation

Contact

Email me at solan053@umn.edu

Retrieved from "http://mriedel.ece.umn.edu/wiki/index.php?title=Arnav_Solanki&oldid=333484"